PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1671s0247.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 250aa    MW: 27776.3 Da    PI: 4.5175
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1671s0247.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.6e-1986136255
                  AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr ++ +g+++AeIrd    + k  r++lg+f+taeeAa a+++a+ +l+g
  Cagra.1671s0247.1.p  86 SYRGVRKRP-WGKYAAEIRDsT--R-KGIRVWLGTFDTAEEAALAYDQAAFALKG 136
                          69*******.**********32..2.24***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.13E-2985144No hitNo description
SuperFamilySSF541719.15E-2286145IPR016177DNA-binding domain
PROSITE profilePS5103222.66986144IPR001471AP2/ERF domain
PfamPF008472.1E-1386136IPR001471AP2/ERF domain
SMARTSM003803.1E-3686150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2986144IPR001471AP2/ERF domain
PRINTSPR003674.0E-118798IPR001471AP2/ERF domain
PRINTSPR003674.0E-11110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009753Biological Processresponse to jasmonic acid
GO:0009861Biological Processjasmonic acid and ethylene-dependent systemic resistance
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MESQTCFFSR DFSPENSSSS SWSSQESFFW EDSFLHQSFD QPFLLSSPTN YYSDDFFSFG  60
PSSIIKEEEE DDATVAAEEE EEEEKSYRGV RKRPWGKYAA EIRDSTRKGI RVWLGTFDTA  120
EEAALAYDQA AFALKGSLAV LNYPSDVVAE SLRKMENVNL NDGESPVVAL KRKHSMRNRP  180
RGKKKSSPSS LTSSPSNSSS SSSPSSSSSL SSTSRKQSVV TTQERDTTTL VVLEDLGAEY  240
LEELMRSCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-2685144160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00023PBMTransfer from AT1G06160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303295.11e-177hypothetical protein CARUB_v10010105mg
SwissprotQ9LND17e-98ERF94_ARATH; Ethylene-responsive transcription factor ERF094
TrEMBLR0IH791e-177R0IH79_9BRAS; Uncharacterized protein
STRINGBra032433.1-P1e-103(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39901859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06160.11e-79octadecanoid-responsive Arabidopsis AP2/ERF 59